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Healthy Home Economist / Archives / Recipes / Appetizer Recipes / Side Recipes / Healthy Baked Beans

Healthy Baked Beans

by Sarah Pope / Affiliate Links ✔

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Healthy recipe for baked beans using soaked beans and whole food sweeteners that you can feel good about serving!

healthy baked beans in a casserole dish on a counter

Baked beans are a popular side dish for barbecues and summer holiday meals.

Unfortunately, supermarket versions contain high fructose corn syrup, GMOs and unhealthy additives. Stay away!

Shockingly, recipes online aren’t much better.

I looked pretty exhaustively to find a decent one to use for our Fourth of July get-together this weekend.

N-O-N-E were decent enough where I could, in good conscience, bake and serve to my friends and family!

Even the “from scratch” recipes typically used canned beans.

Versions using dried beans didn’t soak them properly. This is an important step to prevent an attack of “bean gas” if you know what I mean.

ALL were loaded (and I mean loaded) with sugar.

I did find a few that soaked the beans overnight.

This was encouraging until I saw that these same recipes used the bean cooking water (aka “aquafaba”) in the dish. Yikes!

Ultimately, I decided that I needed to come up with my own truly healthy recipe instead. This often happens if you peruse the 400+ whole food recipes on this blog!

I am happy to report that the results were tasty and satisfying, using only whole sweeteners.

Give this recipe for classically inspired Southern baked beans a try if this dish is on your menu for a family get-together this summer!

healthy baked beans casserole on kitchen counter with red and white oven mitts
4.5 from 4 votes
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Classic Baked Beans Recipe

Healthy recipe for baked beans using properly prepared navy beans and whole food sweeteners that you can feel good about serving to friends and family.

Course Side Dish
Cuisine American
Keyword healthy, low sugar, traditional, whole food
Prep Time 1 hour 15 minutes
Cook Time 4 hours
Soak 8 hours
Total Time 13 hours 15 minutes
Servings 12
Calories 152 kcal
Author Sarah Pope

Ingredients

  • 1 pound dried navy beans use sprouted dried beans for extra digestibility
  • 3 cups chicken broth or filtered water (or blend of the two)
  • 6 cups filtered water
  • 1/2 pound pastured bacon
  • 1 medium yellow onion
  • 1/4 cup sucanat (whole evaporated cane sugar)
  • 1/4 cup old fashioned molasses
  • 1/4 cup unsweetened ketchup
  • 2 tsp dry mustard
  • 1.5 tsp sea salt
  • 1/4 tsp black pepper
  • 2 TBL raw apple cider vinegar

Instructions

  1. Place dried beans in a large glass bowl and add filtered water to cover at least 2 inches above the beans. Stir in ACV only if using unsprouted navy beans.

  2. Leave on the counter for at least 8 hours or overnight.

  3. Drain beans and rinse thoroughly. Place beans in a large pot with 6 cups fresh filtered water.

  4. Bring to a boil, turn down heat, cover and simmer for about 1 hour or until beans are soft.

  5. While beans are cooking, saute diced bacon and onions in a large skillet. Cook over medium heat until bacon is slightly crisp and onions are soft.

  6. Strain and rinse cooked beans in a colander. Place cooked beans in a large glass casserole dish and mix in cooked bacon, onions, chicken broth, sucanat, molasses, ketchup, dry mustard, sea salt and pepper.

  7. Cover the casserole dish with a glass lid (use aluminum foil if you don't have a lid) and bake for 3 hours at 300 °F/ 150 °C.

  8. After 3 hours, remove the lid and cook for an additional hour or until desired consistency and thickness of sauce.

  9. Remove from oven and serve immediately.

  10. Refrigerate room temperature leftovers in a covered glass container with a tight-fitting lid for up to 4 days. You may freeze leftovers as well.

Nutrition Facts
Classic Baked Beans Recipe
Amount Per Serving (0.5 cup)
Calories 152 Calories from Fat 39
% Daily Value*
Fat 4.3g7%
Saturated Fat 1.5g8%
Polyunsaturated Fat 0.5g
Monounsaturated Fat 2.3g
Cholesterol 20mg7%
Sodium 340mg14%
Potassium 177mg5%
Carbohydrates 19.5g7%
Fiber 4g16%
Sugar 8g9%
Protein 8.6g17%
* Percent Daily Values are based on a 2000 calorie diet.
low sugar southern style baked beans in a glass bowl
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Category: Legume Recipes, Side Recipes
Sarah Pope

Sarah Pope MGA has been a Health and Nutrition Educator since 2002. She is a summa cum laude graduate in Economics from Furman University and holds a Master’s degree from the University of Pennsylvania.

She is the author of three books: Amazon #1 bestseller Get Your Fats Straight, Traditional Remedies for Modern Families, and Living Green in an Artificial World.

Her four eBooks Good Diet…Bad Diet, Real Food Fermentation, Ketonomics, and Ancestrally Inspired Dairy-Free Recipes are available for complimentary download via Healthy Home Plus.

Her mission is dedicated to helping families effectively incorporate the principles of ancestral diets within the modern household. She is a sought after lecturer around the world for conferences, summits, and podcasts.

Sarah was awarded Activist of the Year in 2010 at the International Wise Traditions Conference, subsequently serving on the Board of Directors of the nutrition nonprofit the Weston A. Price Foundation for seven years.

Her work has been covered by numerous independent and major media including USA Today, ABC, and NBC among many others.

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Reader Interactions

Comments (6)

  1. Amy

    Sep 20, 2022 at 7:46 pm

    5 stars
    Since the beans and everything else is already cooked, why do they to bake covered for 3 hours and then uncovered for an extra hour? That’s what I would do if the beans weren’t cooked.
    It makes more sense to me to just bake it uncovered for an hour or until desired thickness.

    Reply
    • Sarah Pope

      Sep 20, 2022 at 8:14 pm

      Cooking for a few hours covered allows the sauce to blend and flavors to mix properly and the beans to be infused with flavor. Cooking uncovered for a bit thickens up the sauce as it allows for evaporation.

  2. Becky

    Sep 3, 2022 at 11:52 pm

    I was excited to use your recipe to get a healthier version of baked Beans. But with one substitution, the recipe didn’t turn out. I could not find sucanat (whole evaporated cane sugar). I looked up online what it was and decided to use Private Selection Turbinado Cane Sugar with a rich molasses flavor and crunchy texture which I thought was similar to sucanat.
    I proceeded to make the recipe and did everything else as the recipe dictated. Before cooking, the liquid surrounding the beans, bacon and onions was very runny.
    After cooking the beans for 3 hours, what I found was 2/3rd of the liquid gone and what was left was runny. Nothing had thickened up at all. I had a lot of beans, bacon, onions and very little sauce. I didn’t have time to cook it any longer so I put it in the fridge. After cooling for several hours, it had thickened somewhat. But to be edible, I had to go to the store and add a bottle of BBQ sauce. Other than that the flavor was very good. Could you please reply with your guess as to why the recipe turned out so poorly?

    Reply
    • Sarah Pope

      Sep 4, 2022 at 11:27 am

      No idea what happened as I wasn’t there to see the process. You mentioned that you used a sucanat substitute that has a “rich molasses flavor” … did you use molasses too or skip that ingredient? Molasses is very thick and would have made a big difference to the flavor and sauce consistency.

      If you added a bottle of barbecue sauce from the store, you likely added a lot of sugar in the form of high fructose corn syrup unfortunately 🙁

      The recipe worked perfectly for me is all I can tell you!

  3. Virginia

    Aug 31, 2022 at 9:24 pm

    5 stars
    Can you substitute raw honey for molasses?

    Reply
    • Sarah Pope

      Sep 1, 2022 at 8:42 am

      Honey should never be cooked and has a very different flavor from molasses. So to answer your question, no, this would not be a good substitution.

4.50 from 4 votes (2 ratings without comment)

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